Automated Exploration of Free Energy Landscapes Based on Umbrella Integration.

نویسندگان

  • Yuki Mitsuta
  • Takashi Kawakami
  • Mitsutaka Okumura
  • Shusuke Yamanaka
چکیده

We present a new approach for automated exploration of free energy landscapes on the basis of the umbrella integration (UI) method. The method to search points in the landscape relies on the normal distributions and gradients of the potential of mean force (PMF) obtained from UI calculations. We applied this approach to the alanine dipeptide in solution and demonstrated that the equilibrium and the transition states were efficiently found in the ascending order of the PMF values.

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عنوان ژورنال:
  • International journal of molecular sciences

دوره 19 4  شماره 

صفحات  -

تاریخ انتشار 2018